ERS11712895

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Result Filters

Organism: Bifidobacterium breve
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Attributes

collection date	2018-04-23
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB52406
sample name	HRS-HS9-bin-223
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-13
ENA-LAST-UPDATE	2023-04-13
External Id	SAMEA14435087
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2023-04-13T16:27:05Z
INSDC last update	2023-04-13T16:27:05Z
INSDC status	public
Submitter Id	HRS-HS9-bin-223
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 49,69,89,109,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	42.29
completeness software	checkm
contamination score	0
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
metagenomic source	freshwater metagenome
sample derived from	ERS11712895
scientific_name	Bifidobacterium breve
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach