U.S. flag

An official website of the United States government

ERS11712893

Identifiers
BioSample: SAMEA14434916; SRA: ERS12044567
Organism
Rhizobium sp. Q54
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium; unclassified Rhizobium
Attributes
collection date2018-04-09
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB52406
sample nameHRS-HS3-bin-116
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-13
ENA-LAST-UPDATE2023-04-13
External IdSAMEA14434916
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2023-04-13T16:27:03Z
INSDC last update2023-04-13T16:27:03Z
INSDC statuspublic
Submitter IdHRS-HS3-bin-116
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 49,69,89,109,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score54.68
completeness softwarecheckm
contamination score0.11
geographic location (latitude)48.846361
geographic location (longitude)14.487639
metagenomic sourcefreshwater metagenome
sample derived fromERS11712893
scientific_nameRhizobium sp. Q54
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteria; Proteobacteria; Alphaproteobacteria

BioProject
PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

Submission
EBI; 2023-04-17
Accession:
SAMEA14434916
ID:
34216387

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center
External link. Please review our privacy policy.