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ERS11712880

Identifiers
BioSample: SAMEA14434544; SRA: ERS12043695
Organism
Chitinophaga pinensis
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; Chitinophaga
Attributes
collection date2018-04-06
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB52406
sample nameHRSG-E2-bin-80
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-04-13
ENA-LAST-UPDATE2023-04-13
External IdSAMEA14434544
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2023-04-13T16:27:00Z
INSDC last update2023-04-13T16:27:00Z
INSDC statuspublic
Submitter IdHRSG-E2-bin-80
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 49,69,89,109,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score99.26
completeness softwarecheckm
contamination score0.49
geographic location (latitude)48.846361
geographic location (longitude)14.487639
metagenomic sourcefreshwater metagenome
sample derived fromERS11712880
scientific_nameChitinophaga pinensis
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae

BioProject
PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

Submission
EBI; 2023-04-17
Accession:
SAMEA14434544
ID:
34216306

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