Candidatus Berkelbacteria bacterium

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Result Filters

Organism: Candidatus Berkelbacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Berkelbacteria; unclassified Candidatus Berkelbacteria

Attributes

collection date	2015-11-03
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Switzerland
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJNA428721
sample name	ZE-3nov15-161
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14306551
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:14Z
INSDC last update	2022-06-30T00:19:14Z
INSDC status	public
Submitter Id	ZE-3nov15-161
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	51.44
completeness software	checkm
contamination score	0.47
geographic location (latitude)	47.300659
geographic location (longitude)	8.578777
metagenomic source	freshwater metagenome
sample derived from	SRS3210455
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach