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Candidatus Nomurabacteria bacterium

Identifiers
BioSample: SAMEA14306504; SRA: ERS11897821
Organism
Candidatus Nomurabacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Patescibacteria group; Parcubacteria group; Candidatus Nomurabacteria; unclassified Candidatus Nomurabacteria
Attributes
collection date2019-04-08
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationSwitzerland
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB35640
sample nameTH-08apr19-232
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-06-30
ENA-LAST-UPDATE2022-06-30
External IdSAMEA14306504
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-06-30T00:19:13Z
INSDC last update2022-06-30T00:19:13Z
INSDC statuspublic
Submitter IdTH-08apr19-232
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score67.07
completeness softwarecheckm
contamination score0.85
geographic location (latitude)46.683333
geographic location (longitude)7.716667
metagenomic sourcefreshwater metagenome
sample derived fromERS4065065
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Patescibacteria assembled from Lake Thun

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-07-01
Accession:
SAMEA14306504
ID:
29454928

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