candidate division WWE3 bacterium

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Result Filters

Organism: candidate division WWE3 bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; candidate division WWE3

Attributes

collection date	2019-04-16
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	MiH-16apr19-11
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14306448
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:14Z
INSDC last update	2022-06-30T00:19:14Z
INSDC status	public
Submitter Id	MiH-16apr19-11
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	67.95
completeness software	checkm
contamination score	1.72
geographic location (latitude)	50.654974
geographic location (longitude)	13.948885
metagenomic source	freshwater metagenome
sample derived from	ERS4065081
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach