Thaumarchaeota archaeon

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Result Filters

Organism: Nitrososphaerota archaeon
cellular organisms; Archaea; Thermoproteati; Nitrososphaerota; unclassified Nitrososphaerota

Attributes

collection date	2019-11-11
broad-scale environmental context	freshwater lake
local-scale environmental context	large lake
environmental medium	fresh water
geographic location	Switzerland
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	TE-11nov19-227
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14081572
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:08Z
INSDC last update	2022-06-30T00:19:08Z
INSDC status	public
Submitter Id	TE-11nov19-227
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	90.78
completeness software	checkm
contamination score	0
geographic location (latitude)	46.683333
geographic location (longitude)	7.716667
metagenomic source	freshwater metagenome
sample derived from	ERS6344556
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach