Metagenome-assembled genome: SRR6823441_bin.18_CON... - BioSample

Metagenome-assembled genome: SRR6823441_bin.18_CONCOCT_v1.1_MAG

Organism: uncultured Spirochaetota bacterium
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; environmental samples

Attributes

collection date	2009-11-30
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Mexico
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Subseafloor sediment microbial communities from the background core at a depth of 12-15 cm, 2000m below sea level
sample name	SRR6823441_bin.18_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075601
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:29Z
INSDC last update	2023-01-03T00:32:29Z
INSDC status	public
Submitter Id	SRR6823441_bin.18_CONCOCT_v1.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.36
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	27.0154
geographic location (longitude)	-111.3798
metagenomic source	marine metagenome
sample derived from	SAMN07632362
scientific_name	uncultured Spirochaetes bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6823441 of study SRP134683.

BioProject: PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
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