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Metagenome-assembled genome: SRR6231136_bin.42_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14075584; SRA: ERS11678813
Organism
uncultured Cytophagaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Cytophagia; Cytophagales; Cytophagaceae; environmental samples
Attributes
collection date2016-04-05
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameWastewater treatment plants (WWTPs) are thought to be potential incubators of antibiotic resistance. Persistence of commonly used antibiotics in wastewater may increase the potential for survival and horizontal transfer of adaptive genes in bacterial populations, some of which may pose a threat to human health. In this study, we assayed the concentrations of ten common antibiotics in wastewater influents, treatment stage influents and effluents, and upstream and downstream surface waters from two Charlotte area wastewater plants, including residential and hospital trunkline locations. We performed whole genome shotgun sequencing, to assay the taxonomic and resistome compositions at each of these sites across four time points during the late winter to mid-summer of 2016.
sample nameSRR6231136_bin.42_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14075584
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:24Z
INSDC last update2023-01-03T00:32:24Z
INSDC statuspublic
Submitter IdSRR6231136_bin.42_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score79.86
completeness softwareCheckM
contamination score5.29
geographic location (latitude)35.157238
geographic location (longitude)-80.84958
metagenomic sourcemarine metagenome
sample derived fromSAMN07839264
scientific_nameuncultured Cytophagaceae bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6231136 of study SRP121672.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14075584
ID:
32557499

BioProject Nucleotide

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