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Metagenome-assembled genome: ERR599061_bin.25_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14075184; SRA: ERS11678413
Organism
uncultured Gemmatimonadales bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales; environmental samples
Attributes
collection date2010-01-11
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameSeawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample nameERR599061_bin.25_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14075184
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:21Z
INSDC last update2023-01-03T00:32:21Z
INSDC statuspublic
Submitter IdERR599061_bin.25_CONCOCT_v1.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwaremetaSPAdes
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score96.54
completeness softwareCheckM
contamination score4.4
geographic location (latitude)23.4183
geographic location (longitude)37.245
metagenomic sourcemarine metagenome
sample derived fromSAMEA2619840
scientific_nameuncultured Gemmatimonadales bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR599061 of study ERP001736.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14075184
ID:
32557099

BioProject Nucleotide

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