Metagenome-assembled genome: SRR12240188_bin.2_CON... - BioSample

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Result Filters

Organism: uncultured Frankiaceae bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Frankiales; Frankiaceae; environmental samples

Attributes

collection date	2009-01-01
broad-scale environmental context	Algae
local-scale environmental context	Green algae
environmental medium	Ectosymbionts
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	short, metagnomic reads from lichen thalli
sample name	SRR12240188_bin.2_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14035924
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:00Z
INSDC last update	2023-01-03T00:32:00Z
INSDC status	public
Submitter Id	SRR12240188_bin.2_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	83.22
completeness software	CheckM
contamination score	5.25
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	lichen metagenome
sample derived from	SAMN15548969
scientific_name	uncultured Frankiaceae bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12240188 of study SRP272267.