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Metagenome-assembled genome: SRR12240184_bin.7_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14030118; SRA: ERS11633408
Organism
Lasallia pustulata
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Lecanoromycetes; OSLEUM clade; Umbilicariomycetidae; Umbilicariales; Umbilicariaceae; Lasallia
Attributes
collection date2016-01-01
broad-scale environmental contextAlgae
local-scale environmental contextGreen algae
environmental mediumEctosymbionts
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcelichen metagenome
project nameshort, metagnomic reads from lichen thalli
sample nameSRR12240184_bin.7_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14030118
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:03Z
INSDC last update2023-01-03T00:32:03Z
INSDC statuspublic
Submitter IdSRR12240184_bin.7_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.13.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score74.06
completeness softwareCheckM
contamination score0.75
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcelichen metagenome
sample derived fromSAMN15548981
scientific_nameLasallia pustulata
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12240184 of study SRP272267.

BioProject
PRJEB51077 Large-scale analysis of novel cellular microbes from the lichen biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14030118
ID:
32555437

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