Metagenome-assembled genome: SRR6145064_bin.34_CON... - BioSample

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Result Filters

Organism: Dermacoccus nishinomiyaensis
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Dermacoccaceae; Dermacoccus

Attributes

collection date	2017-07-26
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Skin
geographic location	Hong Kong
investigation type	metagenome-assembled genome
isolation source	human skin metagenome
project name	A metagenomic study on the skin microbiome after contact with MTR trains
sample name	SRR6145064_bin.34_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA13902892
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:31:51Z
INSDC last update	2023-01-03T00:31:51Z
INSDC status	public
Submitter Id	SRR6145064_bin.34_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	95.86
completeness software	CheckM
contamination score	2.55
geographic location (latitude)	22.3
geographic location (longitude)	114.17
metagenomic source	human skin metagenome
sample derived from	SAMN07749908
scientific_name	Dermacoccus nishinomiyaensis
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145064 of study SRP119528.