Metagenome-assembled genome: SRR1950779_bin.24_CON... - BioSample

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Result Filters

Organism: uncultured Nostocoides sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Intrasporangiaceae; Nostocoides; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Skin
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human skin metagenome
project name	Human Skin Microbiome
sample name	SRR1950779_bin.24_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA13902869
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:31:52Z
INSDC last update	2023-01-03T00:31:52Z
INSDC status	public
Submitter Id	SRR1950779_bin.24_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	92.48
completeness software	CheckM
contamination score	2.97
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human skin metagenome
sample derived from	SAMN03398593
scientific_name	uncultured Tetrasphaera sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1950779 of study SRP056821.