Metagenome-assembled genome: SRR15829540_concoct_34

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Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples

Attributes

broad-scale environmental context	poultry
collection date	2020-12
environmental medium	cecal material
geographic location	Belgium
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	Cecal microbiome and resistome of broiler chickens receiving a synbiotic supplementation and/or enrofloxacin
sample name	SRR15829540_concoct_34
ENA first public	2024-11-29
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR15829540_concoct_34
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MetaSPAdes_v3.15.5
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	60.1
completeness software	CheckM2_v1.0.1
contamination score	1.08
geographic location (latitude)	51.03000000
geographic location (longitude)	3.43000000
local environmental context	chicken
metagenomic source	chicken gut metagenome
sample derived from	SAMN21367395
scientific_name	uncultured Clostridia bacterium
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15829540 of study SRP336334.