Metagenome-assembled genome: SRR15342121_concoct_8

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Result Filters

Organism: Lactobacillus crispatus
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	poultry
collection date	2020-04-07
environmental medium	cecal material
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	Microbiome profiling of broilers treated with different antimicrobial growth promoters (AGP) to guide the discovery of AGP alternatives.
sample name	SRR15342121_concoct_8
ENA first public	2024-11-29
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR15342121_concoct_8
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MetaSPAdes_v3.15.5
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	92.12
completeness software	CheckM2_v1.0.1
contamination score	0.03
geographic location (latitude)	39.71825000
geographic location (longitude)	-85.62471000
local environmental context	chicken
metagenomic source	chicken gut metagenome
sample derived from	SAMN20522195
scientific_name	Lactobacillus crispatus
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15342121 of study SRP330911.

Metagenome-assembled genome: SRR15342121_concoct_8
Metagenome-assembled genome: SRR15342121_concoct_8

biosample

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