Metagenome-assembled genome: SRR15342084_concoct_10

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

broad-scale environmental context	poultry
collection date	2020-04-07
environmental medium	cecal material
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	Microbiome profiling of broilers treated with different antimicrobial growth promoters (AGP) to guide the discovery of AGP alternatives.
sample name	SRR15342084_concoct_10
ENA first public	2024-11-29
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR15342084_concoct_10
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MetaSPAdes_v3.15.5
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	59.4
completeness software	CheckM2_v1.0.1
contamination score	2.1
geographic location (latitude)	39.71825000
geographic location (longitude)	-85.62471000
local environmental context	chicken
metagenomic source	chicken gut metagenome
sample derived from	SAMN20522228
scientific_name	uncultured Lachnospiraceae bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15342084 of study SRP330911.

Metagenome-assembled genome: SRR15342084_concoct_10
Metagenome-assembled genome: SRR15342084_concoct_10

biosample

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample