Metagenome-assembled genome: SRR27748189_concoct_1... - BioSample

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Result Filters

Organism: Candidatus Faecalibacterium intestinigallinarum
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium

Attributes

broad-scale environmental context	poultry
collection date	2023
environmental medium	fecal material
geographic location	China
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	metagenome from chicken feces
sample name	SRR27748189_concoct_133
ENA first public	2024-11-29
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR27748189_concoct_133
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MetaSPAdes_v3.15.5
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	80.53
completeness software	CheckM2_v1.0.1
contamination score	0.29
geographic location (latitude)	30.53000000
geographic location (longitude)	104.07000000
local environmental context	chicken
metagenomic source	chicken gut metagenome
sample derived from	SAMN39623943
scientific_name	Candidatus Faecalibacterium intestinigallinarum
sequencing method	Illumina HiSeq 3000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR27748189 of study SRP486190.