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Metagenome-assembled genome: SRR28581534_binner123_Refined_84

Identifiers
BioSample: SAMEA117400600; SRA: ERS22468187
Organism
uncultured Merdibacter sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Merdibacter; environmental samples
Attributes
broad-scale environmental contextpoultry
collection date2023-10
environmental mediumchicken gut
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameNormal metagene sequencing
sample nameSRR28581534_binner123_Refined_84
ENA first public2024-11-29
ENA-CHECKLISTERC000047
INSDC center nameEMG
INSDC statuspublic
Submitter IdSRR28581534_binner123_Refined_84
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMetaSPAdes_v3.15.5
binning parametersdefault
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
broker nameEBI-EMG
completeness score99.78
completeness softwareCheckM2_v1.0.1
contamination score0.36
geographic location (latitude)23.16000000
geographic location (longitude)113.28000000
local environmental contextchicken
metagenomic sourcechicken gut metagenome
sample derived fromSAMN39983792
scientific_nameuncultured Merdibacter sp.
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR28581534 of study SRP500203.

BioProject
PRJEB82473
Retrieve all samples from this project

Submission
EBI; 2024-11-30
Accession:
SAMEA117400600
ID:
45109855

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