Metagenome-assembled genome: SRR28581531_concoct_1... - BioSample

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Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples

Attributes

broad-scale environmental context	poultry
collection date	2023-10
environmental medium	chicken gut
geographic location	China
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	Normal metagene sequencing
sample name	SRR28581531_concoct_112
ENA first public	2024-11-29
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR28581531_concoct_112
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MetaSPAdes_v3.15.5
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	54.38
completeness software	CheckM2_v1.0.1
contamination score	3.81
geographic location (latitude)	23.16000000
geographic location (longitude)	113.31000000
local environmental context	chicken
metagenomic source	chicken gut metagenome
sample derived from	SAMN39983795
scientific_name	uncultured Clostridia bacterium
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR28581531 of study SRP500203.