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TH-11nov19-284: freshwater MAG from Lake Thun

Identifiers
BioSample: SAMEA115862048; SRA: ERS20608647
Organism
Candidatus Methylopumilus sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Candidatus Methylopumilus; unclassified Candidatus Methylopumilus
Attributes
broad-scale environmental contextfreshwater biome
collection date2019-11-11
environmental mediumnatural lake
geographic locationSwitzerland
isolation sourcefreshwater lake
project namePRJEB35640
sample nameTH-11nov19-284
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-07-23T12:49:33Z
ENA-LAST-UPDATE2024-07-23T12:49:33Z
External IdSAMEA115862048
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2024-07-23T12:49:33Z
INSDC last update2024-07-23T12:49:33Z
INSDC statuspublic
Submitter IdTH-11nov19-284
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMegahit
binning parameterscoverage and kmer
binning softwareMetabat2
completeness score58.83
completeness softwareCheckM
contamination score0.43
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextfreshwater lake biome
metagenomic sourcefreshwater metagenome
sample derived fromERS6344557
scientific_nameCandidatus Methylopumilus sp.
taxonomic identity markermulti-marker
Description

Candidatus Methylopumilus sp. assembled from Lake Thun

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2024-07-25
Accession:
SAMEA115862048
ID:
42820845

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