TE-11nov19-300: freshwater MAG from Lake Thun

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Result Filters

Organism: Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; unclassified Pseudomonadota

Attributes

broad-scale environmental context	freshwater biome
collection date	2019-11-11
environmental medium	natural lake
geographic location	Switzerland
isolation source	freshwater lake
project name	PRJEB35640
sample name	TE-11nov19-300
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2024-07-23T12:49:33Z
ENA-LAST-UPDATE	2024-07-23T12:49:33Z
External Id	SAMEA115862036
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2024-07-23T12:49:33Z
INSDC last update	2024-07-23T12:49:33Z
INSDC status	public
Submitter Id	TE-11nov19-300
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	Megahit
binning parameters	coverage and kmer
binning software	Metabat2
completeness score	53.87
completeness software	CheckM
contamination score	0
geographic location (latitude)	46.683333
geographic location (longitude)	7.716667
local environmental context	freshwater lake biome
metagenomic source	freshwater metagenome
sample derived from	ERS6344556
scientific_name	Pseudomonadota bacterium
taxonomic identity marker	multi-marker