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MsH-30jul19-259: freshwater MAG from Lake Most

Identifiers
BioSample: SAMEA115862029; SRA: ERS20608628
Organism
Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria
Attributes
broad-scale environmental contextfreshwater biome
collection date2019-07-30
environmental mediumartificial lake
geographic locationCzechia
isolation sourcefreshwater lake
project namePRJEB35640
sample nameMsH-30jul19-259
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-07-23T12:49:33Z
ENA-LAST-UPDATE2024-07-23T12:49:33Z
External IdSAMEA115862029
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2024-07-23T12:49:33Z
INSDC last update2024-07-23T12:49:33Z
INSDC statuspublic
Submitter IdMsH-30jul19-259
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMegahit
binning parameterscoverage and kmer
binning softwareMetabat2
completeness score94.06
completeness softwareCheckM
contamination score0.65
geographic location (latitude)50.516667
geographic location (longitude)13.616667
local environmental contextfreshwater lake biome
metagenomic sourcefreshwater metagenome
sample derived fromERS4065090
scientific_nameAlphaproteobacteria bacterium
taxonomic identity markermulti-marker
Description

Alphaproteobacteria assembled from Lake Most

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2024-07-25
Accession:
SAMEA115862029
ID:
42806170

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