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MoH-02may19-207: freshwater MAG from Mondsee

Identifiers
BioSample: SAMEA115861985; SRA: ERS20608584
Organism
Gammaproteobacteria bacterium UBA5518
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; unclassified Gammaproteobacteria
Attributes
broad-scale environmental contextfreshwater biome
collection date2019-05-02
environmental mediumnatural lake
geographic locationAustria
isolation sourcefreshwater lake
project namePRJEB35640
sample nameMoH-02may19-207
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-07-23T12:49:34Z
ENA-LAST-UPDATE2024-07-23T12:49:34Z
External IdSAMEA115861985
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2024-07-23T12:49:34Z
INSDC last update2024-07-23T12:49:34Z
INSDC statuspublic
Submitter IdMoH-02may19-207
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMegahit
binning parameterscoverage and kmer
binning softwareMetabat2
completeness score67.92
completeness softwareCheckM
contamination score0.77
geographic location (latitude)47.816667
geographic location (longitude)13.366667
local environmental contextfreshwater lake biome
metagenomic sourcefreshwater metagenome
sample derived fromERS4065073
scientific_nameGammaproteobacteria bacterium UBA5518
taxonomic identity markermulti-marker
Description

Gammaproteobacteria UBA5518 assembled from Mondsee

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2024-07-25
Accession:
SAMEA115861985
ID:
42815292

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