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MiH-16apr19-319: freshwater MAG from Lake Milada

Identifiers
BioSample: SAMEA115861964; SRA: ERS20608563
Organism
Luteolibacter sp.
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Verrucomicrobiaceae; Luteolibacter; unclassified Luteolibacter
Attributes
broad-scale environmental contextfreshwater biome
collection date2019-04-16
environmental mediumartificial lake
geographic locationCzechia
isolation sourcefreshwater lake
project namePRJEB35640
sample nameMiH-16apr19-319
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-07-23T12:49:34Z
ENA-LAST-UPDATE2024-07-23T12:49:34Z
External IdSAMEA115861964
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2024-07-23T12:49:34Z
INSDC last update2024-07-23T12:49:34Z
INSDC statuspublic
Submitter IdMiH-16apr19-319
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMegahit
binning parameterscoverage and kmer
binning softwareMetabat2
completeness score62.19
completeness softwareCheckM
contamination score1.77
geographic location (latitude)50.654974
geographic location (longitude)13.948885
local environmental contextfreshwater lake biome
metagenomic sourcefreshwater metagenome
sample derived fromERS4065081
scientific_nameLuteolibacter sp.
taxonomic identity markermulti-marker
Description

Luteolibacter sp. assembled from Lake Milada

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2024-07-25
Accession:
SAMEA115861964
ID:
42814789

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