MiH-14oct19-76: freshwater MAG from Lake Milada

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Result Filters

Organism: Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria

Attributes

broad-scale environmental context	freshwater biome
collection date	2019-10-14
environmental medium	artificial lake
geographic location	Czechia
isolation source	freshwater lake
project name	PRJEB35640
sample name	MiH-14oct19-76
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2024-07-23T12:49:34Z
ENA-LAST-UPDATE	2024-07-23T12:49:34Z
External Id	SAMEA115861957
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2024-07-23T12:49:34Z
INSDC last update	2024-07-23T12:49:34Z
INSDC status	public
Submitter Id	MiH-14oct19-76
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	Megahit
binning parameters	coverage and kmer
binning software	Metabat2
completeness score	62.23
completeness software	CheckM
contamination score	1.1
geographic location (latitude)	50.633333
geographic location (longitude)	13.933333
local environmental context	freshwater lake biome
metagenomic source	freshwater metagenome
sample derived from	ERS6344551
scientific_name	Alphaproteobacteria bacterium
taxonomic identity marker	multi-marker