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ME-04may21-LR-69: freshwater MAG from Lake Medard

Identifiers
BioSample: SAMEA115861888; SRA: ERS20608487
Organism
Bacteroidia bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; unclassified Bacteroidia
Attributes
broad-scale environmental contextfreshwater biome
collection date2021-05-04
environmental mediumartificial lake
geographic locationCzechia
isolation sourcefreshwater lake
project namePRJEB35640
sample nameME-04may21-LR-69
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-07-23T12:49:34Z
ENA-LAST-UPDATE2024-07-23T12:49:34Z
External IdSAMEA115861888
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2024-07-23T12:49:34Z
INSDC last update2024-07-23T12:49:34Z
INSDC statuspublic
Submitter IdME-04may21-LR-69
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareFlye
binning parameterscoverage and kmer
binning softwareMetabat2
completeness score82.76
completeness softwareCheckM
contamination score0.27
geographic location (latitude)50.166667
geographic location (longitude)12.583333
local environmental contextfreshwater lake biome
metagenomic sourcefreshwater metagenome
sample derived fromERS20608331
scientific_nameBacteroidia bacterium
taxonomic identity markermulti-marker
Description

Bacteroidia assembled from Lake Medard

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2024-07-25
Accession:
SAMEA115861888
ID:
42813449

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