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AE-03may19-119: freshwater MAG from Attersee

Identifiers
BioSample: SAMEA115861791; SRA: ERS20608390
Organism
Bacteroidia bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; unclassified Bacteroidia
Attributes
broad-scale environmental contextfreshwater biome
collection date2019-05-03
environmental mediumnatural lake
geographic locationAustria
isolation sourcefreshwater lake
project namePRJEB35640
sample nameAE-03may19-119
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-07-23T12:49:34Z
ENA-LAST-UPDATE2024-07-23T12:49:34Z
External IdSAMEA115861791
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2024-07-23T12:49:34Z
INSDC last update2024-07-23T12:49:34Z
INSDC statuspublic
Submitter IdAE-03may19-119
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMegahit
binning parameterscoverage and kmer
binning softwareMetabat2
completeness score58.6
completeness softwareCheckM
contamination score1.03
geographic location (latitude)47.866667
geographic location (longitude)13.533333
local environmental contextfreshwater lake biome
metagenomic sourcefreshwater metagenome
sample derived fromERS4065074
scientific_nameBacteroidia bacterium
taxonomic identity markermulti-marker
Description

Bacteroidia assembled from Attersee

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2024-07-25
Accession:
SAMEA115861791
ID:
42811967

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