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Metagenome-assembled genome: ERR594345_concoct_238

Identifiers
BioSample: SAMEA115421903; SRA: ERS18498150
Organism
uncultured archaeon
cellular organisms; Archaea; environmental samples
Attributes
broad-scale environmental contextwater
collection datenot provided
environmental mediumtara
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameSeawater was filtered from different depths to retain small cell sizes. The DNA was extracted and submitted to high throughput sequencing.
sample nameERR594345_concoct_238
ENA first public2024-03-18
ENA-CHECKLISTERC000047
INSDC center nameEMG
INSDC statuspublic
Submitter IdERR594345_concoct_238
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.15.3
binning parametersdefault
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
broker nameEBI-EMG
completeness score54.71
completeness softwareCheckM2_v1.0.1
contamination score1.11
geographic location (latitude)20.84570000
geographic location (longitude)63.58510000
local environmental contextocean
metagenomic sourcemarine metagenome
sample derived fromSAMEA2619974
scientific_nameuncultured archaeon
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR594345 of study ERP001737.

BioProject
PRJEB51168
Retrieve all samples from this project

Submission
EBI; 2024-06-04
Accession:
SAMEA115421903
ID:
41667529

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