Metagenome-assembled genome: ERR599000_concoct_83

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Result Filters

Organism: uncultured Sphingobium sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium; environmental samples

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample name	ERR599000_concoct_83
ENA first public	2024-03-17
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	ERR599000_concoct_83
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit_v1.1.3
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	72.82
completeness software	CheckM2_v1.0.1
contamination score	2.84
geographic location (latitude)	-20.93150000
geographic location (longitude)	-35.17940000
local environmental context	ocean
metagenomic source	marine metagenome
sample derived from	SAMEA2621232
scientific_name	uncultured Sphingobium sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599000 of study ERP001736.