LH-02apr19-149

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Result Filters

Identifiers: BioSample: SAMEA115347375; Sample name: LH-02apr19-149; SRA: ERS18353362

Organism: Holophagaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Acidobacteriota; Holophagae; Holophagales; Holophagaceae; unclassified Holophagaceae

Attributes

broad-scale environmental context	freshwater ecosystem
collection date	2019-04-02
environmental medium	freshwater lake biome
project name	PRJEB35640
geographic location	Switzerland
isolation source	Lake Lugano
assembly software	MEGAHIT
binning software	MetaBAT2
organism	Holophagaceae bacterium
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
sample derived from	ERS4065071
geographic location (longitude)	9.35965 DD
taxonomic identity marker	multi-marker approach
binning parameters	coverage and kmer
completeness score	88.5 %
contamination score	0.1 %
geographic location (latitude)	46.009123 DD
scientific_name	Holophagaceae bacterium
local environmental context	freshwater lake
metagenomic source	lake water metagenome
completeness software	CheckM