metabat2_6730_HET_VAC_hybrid.7 MAG

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Result Filters

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Attributes

broad-scale environmental context	Gallus gallus
collection date	2021-09-14
environmental medium	Caecal contents
geographic location	United Kingdom
isolation source	Caecal contents from a chicken (Gallus gallus)
project name	Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample name	metabat2_6730_HET_VAC_hybrid.7 MAG
ENA first public	2024-05-09
ENA-CHECKLIST	ERC000011
External Id	SAMEA115146137
INSDC center name	The Roslin Institute (University of Edinburgh)
INSDC last update	2024-01-26T11:57:47Z
INSDC status	public
Submitter Id	metabat2_6730_HET_VAC_hybrid.7 MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	Default MetaBAT 2 parameters
binning software	MetaBAT 2
completeness score	84.33
completeness software	CheckM2
contamination score	0
geographic location (latitude)	55.86
geographic location (longitude)	-3.2
local environmental context	Gastrointestinal tract microbiota
metagenomic source	chicken gut metagenome
sample derived from	ERS16138939
scientific_name	Escherichia coli
taxonomic identity marker	GTDB-Tk

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138939

BioProject: PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
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