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MAG for uncultured beta proteobacterium

Identifiers
BioSample: SAMEA114834429; SRA: ERS17259296
Organism
uncultured beta proteobacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; environmental samples
Attributes
broad-scale environmental contextFreshwater
collection date2021-11-05
environmental mediumnot collected
geographic locationDenmark
isolation sourcesediment
project nameMicroflora Danica
sample nameMFD10007.bin.2.138
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114834429
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T10:00:30Z
INSDC statuspublic
Submitter IdMFD10007.bin.2.138
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score60.36
completeness softwareCheckM2
contamination score6.47
geographic location (latitude)55.8579
geographic location (longitude)12.4931
local environmental contextStanding freshwater
metagenomic sourcesediment metagenome
sample derived fromERS15928292
scientific_nameuncultured beta proteobacterium
taxonomic identity markermulti-marker approach
Description

MQ MAG for uncultured beta proteobacterium, recovered from an environmental sample from Denmark

BioProject
PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project

Submission
EBI; 2024-12-26
Accession:
SAMEA114834429
ID:
45972264

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