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MAG for uncultured Actinomycetota bacterium

Identifiers
BioSample: SAMEA114830894; SRA: ERS17255761
Organism
uncultured Actinomycetota bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; environmental samples
Attributes
broad-scale environmental contextRocky habitats and caves
collection date2021-09-27
environmental mediumnot collected
geographic locationDenmark
isolation sourcesoil
project nameMicroflora Danica
sample nameMFD09603.bin.1.83
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114830894
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T10:00:20Z
INSDC statuspublic
Submitter IdMFD09603.bin.1.83
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score91.9
completeness softwareCheckM2
contamination score3.44
geographic location (latitude)55.2067
geographic location (longitude)14.9796
local environmental contextRocky slopes with vegetation
metagenomic sourcesoil metagenome
sample derived fromERS14381674
scientific_nameuncultured Actinomycetota bacterium
taxonomic identity markermulti-marker approach
Description

HQ MAG for uncultured Actinomycetota bacterium, recovered from an environmental sample from Denmark

Submission
EBI; 2024-12-26
Accession:
SAMEA114830894
ID:
45983700

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