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MAG for uncultured Gemmatimonadales bacterium

Identifiers
BioSample: SAMEA114828231; SRA: ERS17253098
Organism
uncultured Gemmatimonadales bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales; environmental samples
Attributes
broad-scale environmental contextGrassland formations
collection date2020-08-03
environmental mediumnot collected
geographic locationDenmark
isolation sourcesoil
project nameMicroflora Danica
sample nameMFD09212.bin.1.3
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114828231
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T10:00:13Z
INSDC statuspublic
Submitter IdMFD09212.bin.1.3
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score93.65
completeness softwareCheckM2
contamination score0.65
geographic location (latitude)56.90241
geographic location (longitude)10.25675
local environmental contextNatural grasslands
metagenomic sourcesoil metagenome
sample derived fromERS14381640
scientific_nameuncultured Gemmatimonadales bacterium
taxonomic identity markermulti-marker approach
Description

HQ MAG for uncultured Gemmatimonadales bacterium, recovered from an environmental sample from Denmark

Submission
EBI; 2024-12-26
Accession:
SAMEA114828231
ID:
45986662

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