U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MAG for uncultured Alphaproteobacteria bacterium

Identifiers
BioSample: SAMEA114827573; SRA: ERS17252440
Organism
uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples
Attributes
broad-scale environmental contextFields
collection date2020-03-25
environmental mediumnot collected
geographic locationDenmark
isolation sourcesoil
project nameMicroflora Danica
sample nameMFD08669.bin.1.44
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114827573
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T10:00:11Z
INSDC statuspublic
Submitter IdMFD08669.bin.1.44
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score97.24
completeness softwareCheckM2
contamination score3.11
geographic location (latitude)55.45114444
geographic location (longitude)8.920947061
local environmental contextPoales, Cereal
metagenomic sourcesoil metagenome
sample derived fromERS14381644
scientific_nameuncultured Alphaproteobacteria bacterium
taxonomic identity markermulti-marker approach
Description

HQ MAG for uncultured Alphaproteobacteria bacterium, recovered from an environmental sample from Denmark

Submission
EBI; 2024-12-26
Accession:
SAMEA114827573
ID:
45981716

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center