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MAG for uncultured proteobacterium

Identifiers
BioSample: SAMEA114823951; SRA: ERS17248818
Organism
uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; environmental samples
Attributes
broad-scale environmental contextCoastal
collection date2021-07-20
environmental mediumnot collected
geographic locationDenmark
isolation sourcesoil
project nameMicroflora Danica
sample nameMFD05684.bin.1.80
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114823951
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T09:59:59Z
INSDC statuspublic
Submitter IdMFD05684.bin.1.80
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score99.99
completeness softwareCheckM2
contamination score0
geographic location (latitude)55.5312
geographic location (longitude)8.2638
local environmental contextSalt marshes and salt meadows
metagenomic sourcesoil metagenome
sample derived fromERS14381672
scientific_nameuncultured proteobacterium
taxonomic identity markermulti-marker approach
Description

HQ MAG for uncultured proteobacterium, recovered from an environmental sample from Denmark

Submission
EBI; 2024-12-26
Accession:
SAMEA114823951
ID:
45985736

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