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MAG for uncultured Alphaproteobacteria bacterium

Identifiers
BioSample: SAMEA114821757; SRA: ERS17246624
Organism
uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples
Attributes
broad-scale environmental contextGrassland formations
collection date2021-09-29
environmental mediumnot collected
geographic locationDenmark
isolation sourcesoil
project nameMicroflora Danica
sample nameMFD05454.bin.2.64
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114821757
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T09:59:52Z
INSDC statuspublic
Submitter IdMFD05454.bin.2.64
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score59.56
completeness softwareCheckM2
contamination score0.47
geographic location (latitude)54.9631
geographic location (longitude)12.5121
local environmental contextSemi-natural dry grasslands
metagenomic sourcesoil metagenome
sample derived fromERS14381670
scientific_nameuncultured Alphaproteobacteria bacterium
taxonomic identity markermulti-marker approach
Description

MQ MAG for uncultured Alphaproteobacteria bacterium, recovered from an environmental sample from Denmark

Submission
EBI; 2024-12-26
Accession:
SAMEA114821757
ID:
45979043

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