MAG for uncultured proteobacterium

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Result Filters

Organism: uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; environmental samples

Attributes

broad-scale environmental context	Grassland formations
collection date	2021-06-23
environmental medium	not collected
geographic location	Denmark
isolation source	soil
project name	Microflora Danica
sample name	MFD04428.bin.1.4
ENA first public	2024-12-25
ENA-CHECKLIST	ERC000011
External Id	SAMEA114816367
INSDC center name	Center for Microbial Communities
INSDC last update	2023-12-07T09:59:35Z
INSDC status	public
Submitter Id	MFD04428.bin.1.4
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parameters	Ensemble iterative binning using coverage and kmer
binning software	MetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score	100
completeness software	CheckM2
contamination score	0.12
geographic location (latitude)	55.7148
geographic location (longitude)	8.3158
local environmental context	Semi-natural tall-herb humid meadows
metagenomic source	soil metagenome
sample derived from	ERS15928281
scientific_name	uncultured proteobacterium
taxonomic identity marker	multi-marker approach

Description: HQ MAG for uncultured proteobacterium, recovered from an environmental sample from Denmark

BioProject: PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project