MAG for uncultured Verrucomicrobiae bacterium

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Result Filters

Organism: uncultured Verrucomicrobiae bacterium
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; environmental samples

Attributes

broad-scale environmental context	Freshwater
collection date	2020-07-28
environmental medium	not collected
geographic location	Denmark
isolation source	sediment
project name	Microflora Danica
sample name	MFD03044.bin.1.108
ENA first public	2024-12-25
ENA-CHECKLIST	ERC000011
External Id	SAMEA114813760
INSDC center name	Center for Microbial Communities
INSDC last update	2023-12-07T09:59:25Z
INSDC status	public
Submitter Id	MFD03044.bin.1.108
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parameters	Ensemble iterative binning using coverage and kmer
binning software	MetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score	92.78
completeness software	CheckM2
contamination score	2.56
geographic location (latitude)	56.425
geographic location (longitude)	10.3691
local environmental context	Standing freshwater
metagenomic source	sediment metagenome
sample derived from	ERS14381661
scientific_name	uncultured Verrucomicrobiae bacterium
taxonomic identity marker	multi-marker approach

Description: HQ MAG for uncultured Verrucomicrobiae bacterium, recovered from an environmental sample from Denmark

BioProject: PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project