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MAG for uncultured proteobacterium

Identifiers
BioSample: SAMEA114813194; SRA: ERS17238061
Organism
uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; environmental samples
Attributes
broad-scale environmental contextSaltwater
collection date2020-07-19
environmental mediumnot collected
geographic locationDenmark
isolation sourcesediment
project nameMicroflora Danica
sample nameMFD02832.bin.3.194
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114813194
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T09:59:22Z
INSDC statuspublic
Submitter IdMFD02832.bin.3.194
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score57.42
completeness softwareCheckM2
contamination score0.26
geographic location (latitude)55.0538
geographic location (longitude)14.7874
local environmental contextOpen sea and tidal areas
metagenomic sourcesediment metagenome
sample derived fromERS16252357
scientific_nameuncultured proteobacterium
taxonomic identity markermulti-marker approach
Description

MQ MAG for uncultured proteobacterium, recovered from an environmental sample from Denmark

BioProject
PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project

Submission
EBI; 2024-12-26
Accession:
SAMEA114813194
ID:
45973385

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