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MAG for uncultured Spirochaetota bacterium

Identifiers
BioSample: SAMEA114813005; SRA: ERS17237872
Organism
uncultured Spirochaetota bacterium
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; environmental samples
Attributes
broad-scale environmental contextUrban
collection date2020-07-15
environmental mediumnot collected
geographic locationDenmark
isolation sourcesoil
project nameMicroflora Danica
sample nameMFD02809.bin.2.232
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114813005
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T09:59:21Z
INSDC statuspublic
Submitter IdMFD02809.bin.2.232
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score64.59
completeness softwareCheckM2
contamination score4.08
geographic location (latitude)56.815
geographic location (longitude)10.0546
local environmental contextGreenspaces
metagenomic sourcesoil metagenome
sample derived fromERS15928279
scientific_nameuncultured Spirochaetota bacterium
taxonomic identity markermulti-marker approach
Description

MQ MAG for uncultured Spirochaetota bacterium, recovered from an environmental sample from Denmark

BioProject
PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project

Submission
EBI; 2024-12-26
Accession:
SAMEA114813005
ID:
45972001

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