MAG for uncultured Alphaproteobacteria bacterium

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Result Filters

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

broad-scale environmental context	Coastal
collection date	2020-09-22
environmental medium	not collected
geographic location	Denmark
isolation source	soil
project name	Microflora Danica
sample name	MFD02581.bin.1.86
ENA first public	2024-12-25
ENA-CHECKLIST	ERC000011
External Id	SAMEA114812756
INSDC center name	Center for Microbial Communities
INSDC last update	2023-12-07T09:59:19Z
INSDC status	public
Submitter Id	MFD02581.bin.1.86
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parameters	Ensemble iterative binning using coverage and kmer
binning software	MetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score	99.92
completeness software	CheckM2
contamination score	1
geographic location (latitude)	56.7958
geographic location (longitude)	8.5876
local environmental context	Sea cliffs and shingle or stony beaches
metagenomic source	soil metagenome
sample derived from	ERS14381656
scientific_name	uncultured Alphaproteobacteria bacterium
taxonomic identity marker	multi-marker approach

Description: HQ MAG for uncultured Alphaproteobacteria bacterium, recovered from an environmental sample from Denmark

BioProject: PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project