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MAG for uncultured Alphaproteobacteria bacterium

Identifiers
BioSample: SAMEA114812516; SRA: ERS17237383
Organism
uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples
Attributes
broad-scale environmental contextCoastal
collection date2020-09-24
environmental mediumnot collected
geographic locationDenmark
isolation sourcesoil
project nameMicroflora Danica
sample nameMFD02416.bin.2.258
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114812516
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T09:59:17Z
INSDC statuspublic
Submitter IdMFD02416.bin.2.258
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score81.34
completeness softwareCheckM2
contamination score1.12
geographic location (latitude)56.8577
geographic location (longitude)9.5553
local environmental contextSalt marshes and salt meadows
metagenomic sourcesoil metagenome
sample derived fromERS14381625
scientific_nameuncultured Alphaproteobacteria bacterium
taxonomic identity markermulti-marker approach
Description

MQ MAG for uncultured Alphaproteobacteria bacterium, recovered from an environmental sample from Denmark

Submission
EBI; 2024-12-26
Accession:
SAMEA114812516
ID:
45981355

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