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Metagenome-Assembled Genome: SRR23388431_bin.28_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114449450; SRA: ERS16436094
Organism
Haemophilus parainfluenzae
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus
Attributes
broad-scale environmental contexthuman digestive system
collection date2022
environmental mediumsubgingival plaque
geographic locationHong Kong
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameSystematic Analysis of Site-Specific Biosynthetic Gene Clusters (BGCs) of Oral Microbiome in Periodontitis
sample nameSRR23388431_bin.28_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR23388431_bin.28_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score58.62
completeness softwareCheckM
contamination score0.0
geographic location (latitude)22.3193
geographic location (longitude)114.1694
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN33196953
scientific_nameHaemophilus parainfluenzae
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus parainfluenzae
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR23388431 of study SRP421773.

BioProject
PRJEB65452
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114449450
ID:
37600046

BioProject Nucleotide

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