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Metagenome-Assembled Genome: SRR15839772_bin.19_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114447305; SRA: ERS16433949
Organism
Streptococcus salivarius
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Attributes
broad-scale environmental contexthuman digestive system
collection date2018-08-30
environmental mediumsaliva
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameThe salivary microbiome of SACC patients and healthy controls was profiled to investigate the microbial diversity, composition and function
sample nameSRR15839772_bin.19_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR15839772_bin.19_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score58.12
completeness softwareCheckM
contamination score0.9
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN21380439
scientific_nameStreptococcus salivarius
sequencing methodIllumina MiSeq
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus salivarius
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15839772 of study SRP336507.

BioProject
PRJEB57339
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114447305
ID:
37600805

BioProject Nucleotide

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