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bff738c7-9683-4f94-b287-c2cb1e0b670a-asg-MAGScoT_cleanbin_000071

Identifiers
BioSample: SAMEA114406332; SRA: ERS16395006
Organism
Candidatus Binatia bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Binatota; Candidatus Binatia; unclassified Candidatus Binatia
Attributes
broad-scale environmental contextaquatic biome
collected byRODRIGO COSTA
collection date2021-06-08
depth16
environmental mediumadult sponge tissue
geographic locationPortugal
host life stageadult
hostSpongia officinalis
host taxonomy ID252964 (252964)
identified byJORGE GONÇALVES
investigation typemetagenome-assembled genome
isolation sourceSponge: Spongia officinalis
tissueWHOLE ORGANISM
project nameASG
family roleHeterotrophic Microbiome (Mostly)
sample namebff738c7-9683-4f94-b287-c2cb1e0b670a
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
GALGeomar Helmholtz Centre
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Idbff738c7-9683-4f94-b287-c2cb1e0b670a
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionUNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES
common namecommercial sponge
completeness score94.78
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score3.36
geographic location (latitude)36.98
geographic location (longitude)7.99
geographic location (region and locality)Pedra da Greta
habitatCoastal Seawater
identifier_affiliationCENTRE OF MARINE SCIENCES
local environmental contextmarine benthic biome
metagenomic sourcesponge metagenome
number of standard tRNAs extracted48
sample derived fromSAMEA114406238
scientific_nameCandidatus Binatia bacterium
sequencing methodPacbio Sequel II
specimen idGHC0000125
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markerani_screen
tolidodSpoOffi2.Candidatus_Binatia_2
BioProject
PRJEB68406 odSpoOffi2.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-09-22
Accession:
SAMEA114406332
ID:
37509883

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