broad-scale environmental context | aquatic biome |
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collected by | RODRIGO COSTA |
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collection date | 2021-06-08 |
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depth | 16 |
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environmental medium | adult sponge tissue |
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geographic location | Portugal |
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host life stage | adult |
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host | Spongia officinalis |
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host taxonomy ID | 252964 (252964) |
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identified by | JORGE GONÇALVES |
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investigation type | metagenome-assembled genome |
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isolation source | Sponge: Spongia officinalis |
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tissue | WHOLE ORGANISM |
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project name | ASG |
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family role | Heterotrophic Microbiome (Mostly) |
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sample name | 82f3ac27-4bc5-4c66-a35b-9464a7289bd9 |
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specimen voucher | NOT PROVIDED |
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16S recovered | Yes |
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16S recovery software | PROKKA (version 1.14.5) |
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ENA-CHECKLIST | ERC000047 |
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GAL | Geomar Helmholtz Centre |
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GAL_sample_id | NOT PROVIDED |
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INSDC center name | Tree of Life Programme |
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MAG coverage software | Minimap2 (version 2.24-r1122) |
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Submitter Id | 82f3ac27-4bc5-4c66-a35b-9464a7289bd9 |
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assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
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assembly software | metaMDBG |
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binning parameters | coverage; graph; hic-mapping |
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binning software | MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR |
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collecting institution | UNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES |
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common name | commercial sponge |
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completeness score | 85.81 |
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completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
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contamination score | 1.48 |
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geographic location (latitude) | 36.98 |
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geographic location (longitude) | 7.99 |
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geographic location (region and locality) | Pedra da Greta |
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habitat | Coastal Seawater |
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identifier_affiliation | CENTRE OF MARINE SCIENCES |
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local environmental context | marine benthic biome |
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metagenomic source | sponge metagenome |
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number of standard tRNAs extracted | 40 |
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sample derived from | SAMEA114406238 |
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scientific_name | Pseudomonadales bacterium |
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sequencing method | Pacbio Sequel II |
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specimen id | GHC0000125 |
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tRNA extraction software | PROKKA (version 1.14.5) |
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taxonomic classification | GTDB-TK (version 2.1.1); GTDB (release 207_v2) |
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taxonomic identity marker | taxonomic classification defined by topology and ANI |
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tolid | odSpoOffi2.Pseudomonadales_9 |
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