Metagenome-assembled genome: MGG06727_1680015466

Organism: uncultured Alistipes sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples

Attributes

broad-scale environmental context	Host-associated
collection date	2017-10-25
environmental medium	Feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3199578 of study ERP113840.
sample name	MGG06727_1680015466
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-21
ENA-LAST-UPDATE	2023-04-21
External Id	SAMEA112936254
INSDC center alias	UNIVERSITY OF GENEVA
INSDC center name	UNIVERSITY OF GENEVA
INSDC first public	2023-04-21T00:23:04Z
INSDC last update	2023-04-21T00:23:04Z
INSDC status	public
Submitter Id	MGG06727_1680015466
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSpades_v3.13
binning parameters	default
binning software	metagenome_atlas_v2.3
completeness score	87.5
completeness software	checkM_v1.1
contamination score	5.21
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Mouse digestive system
metagenomic source	mouse gut metagenome
sample derived from	SAMEA5382053
scientific_name	uncultured Alistipes sp.
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This is a Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set ERP113840. This sample represents a Metagenome-assembled genome from the metagenomic run ERR3199578.

BioSample