Thlassiosira_assembly

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Result Filters

Organism: uncultured Thalassiosira
cellular organisms; Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; environmental samples

Attributes

broad-scale environmental context	Freshwater lake
collection date	2018-04-03
environmental medium	environmental material
geographic location	Czech Republic
isolation source	Freshwater lake
project name	High resolution sampling of freshwater reservoir in Czech Republic (PRJEB52406)
sample name	Thlassiosira_assembly
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-13
ENA-LAST-UPDATE	2023-04-13
External Id	SAMEA112194946
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2023-04-13T16:27:28Z
INSDC last update	2023-04-13T16:27:28Z
INSDC status	public
Submitter Id	Thlassiosira_assembly
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT
binning parameters	Coverage and kmer
binning software	MetaBAT2
completeness score	49.02
completeness software	BUSCO
contamination score	0
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
local environmental context	Freshwater lake
metagenomic source	freshwater metagenome
sample derived from	ERS11712898
scientific_name	uncultured Thalassiosira
taxonomic identity marker	multi-marker aproach